RnoALTD0011471-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13891723-13896822:-
Coord C1 exon
chr3:13896714-13896822
Coord A exon
NA
Coord C2 exon
chr3:13891723-13892232
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AATATTTTGATGTGCCACAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
GCGCCATGGCTGCGGAGCGGACCCGGCCGCTGCGACGCTCTGGCGGCCCGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
NA
Seq C2 exon
GTAAATATTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTGCTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGCACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAAATAGATGATTCTGTTCAGGACGCATTGCACTGGAAGAAGGTTTACTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCATCATTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAGGATGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCGGTGTGAGCCCGG
R:
CCAGGGGAAGGAGTTTGAGGA
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]