MmuALTD0005477-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34678078-34681542:-
Coord C1 exon
chr2:34681482-34681542
Coord A exon
NA
Coord C2 exon
chr2:34678078-34678587
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AATATTTTGATGTGCCACAGGTA
3' ss Score
7.32
Exon sequences
Seq C1 exon
CGAGCGCGCCTAGTCGGTGTGAGCCCGGCGCGAGGTCCCGGGCCCCGGGGCGCTCGCTCAG
Seq A exon
NA
Seq C2 exon
GTAAATATTTCCATAACCTTATGGAGAGAAAGGACTTTGAGACATGGCTTGATAACATTTCTGTTACATTTCTTTCTCTGACGGACTTGCAGAAAAATGAAACTCTGGACCACCTGATTAGTCTGAGTGGGGCAGTCCAGCTCAGGCATCTCTCCAATAACCTGGAGACTCTCCTCAAGCGGGACTTCCTCAAACTCCTTCCCCTGGAGCTCAGTTTTTATTTGTTAAAATGGCTCGATCCTCAGACTTTACTCACATGCTGCCTGGTCTCTAAGCAGTGGAATAAGGTGATAAGTGCCTGTACAGAGGTGTGGCAGACTGCATGTAAAAATTTGGGCTGGCAGATAGATGATTCTGTTCAGGACTCATTGCACTGGAAGAAGGTTTATTTGAAGGCTATTTTGAGGATGAAGCAACTGGAGGACCATGAAGCCTTTGAGACCTCTTCGTTAATTGGACATAGTGCCAGAGTGTATGCACTTTACTACAAAGATGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949-1-7,2-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF129372=F-box-like=WD(100=29.3),PF0040027=WD40=PU(68.6=14.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGTCGGTGTGAGCCCGG
R:
AGTCTGAGGATCGAGCCATTT
Band lengths:
300-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: