HsaALTD0003537-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000112769 | LAMA4
Description
laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr6:112187450-112189205:-
Coord C1 exon
chr6:112189149-112189205
Coord A exon
chr6:112189131-112189148
Coord C2 exon
chr6:112187450-112187601
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGG
5' ss Score
2.23
3' ss Seq
AAGAAATGTTTCACCTCCAGGCT
3' ss Score
6.74
Exon sequences
Seq C1 exon
TGTGCAACTGCGGGGGAGGCCCATGTGACAGTGTAACCGGAGAATGCTTGGAAGAAG
Seq A exon
GTTTTGAACCCCCTACAG
Seq C2 exon
GCTGTGATAAGTGCGTCTGGGACCTGACTGATGACCTGCGGTTAGCAGCGCTCTCCATCGAGGAAGGCAAATCCGGGGTGCTGAGCGTATCCTCTGGGGCCGCCGCTCATAGGCACGTGAATGAAATCAACGCCACCATCTACCTCCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112769-31-35,32-35,33-35,34-35,36-35-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.8)
A:
NA
C2:
PF060089=Laminin_I=PU(11.7=60.8)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTGACAGTGTAACCGG
R:
CGGATTTGCCTTCCTCGATGG
Band lengths:
113-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains