HsaEX6048977 @ hg38
Exon Skipping
Gene
ENSG00000112769 | LAMA4
Description
laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr6:112185237-112189205:-
Coord C1 exon
chr6:112189110-112189205
Coord A exon
chr6:112187450-112187601
Coord C2 exon
chr6:112185237-112185347
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAGAAATGTTTCACCTCCAGGCT
3' ss Score
6.74
5' ss Seq
AAAGTACGC
5' ss Score
6.02
Exon sequences
Seq C1 exon
TGTGCAACTGCGGGGGAGGCCCATGTGACAGTGTAACCGGAGAATGCTTGGAAGAAGGTTTTGAACCCCCTACAGGCATGGACTGCCCAACCATAA
Seq A exon
GCTGTGATAAGTGCGTCTGGGACCTGACTGATGACCTGCGGTTAGCAGCGCTCTCCATCGAGGAAGGCAAATCCGGGGTGCTGAGCGTATCCTCTGGGGCCGCCGCTCATAGGCACGTGAATGAAATCAACGCCACCATCTACCTCCTCAAA
Seq C2 exon
ACAAAATTGTCAGAAAGAGAAAACCAATACGCCCTAAGAAAGATACAAATCAACAATGCTGAGAACACGATGAAAAGCCTTCTGTCTGACGTAGAGGAATTAGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112769-'33-38,'33-35,38-38
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.0)
A:
PF060089=Laminin_I=PU(11.7=60.8)
C2:
PF060089=Laminin_I=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAACTGCGGGGGAG
R:
TCAACTAATTCCTCTACGTCAGACA
Band lengths:
203-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains