RnoEX6062862 @ rn6
Exon Skipping
Gene
ENSRNOG00000000599 | Lama4
Description
laminin subunit alpha 4 [Source:RGD Symbol;Acc:1560062]
Coordinates
chr20:44125231-44128370:+
Coord C1 exon
chr20:44125231-44125305
Coord A exon
chr20:44126975-44127126
Coord C2 exon
chr20:44128260-44128370
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGTTTCATCTCCAGGCT
3' ss Score
11.65
5' ss Seq
AAAGTAGGC
5' ss Score
5
Exon sequences
Seq C1 exon
TGTGCAACTGTGGGGGCGGCCCATGTGACAGCGTAACCGGAGAGTGCTTGGAAGAAGGATTTGAACTCCCTACAG
Seq A exon
GCTGTGATAAGTGTGTCTGGGACTTGACCGACGACCTGCGATTAGCAGCGCTCTCCATCGAAGAGAGCAAATCCGGGCTGCTGAGCGTGTCCTCCGGCGCTGCGGCCCATAGACACGTGACCGACATGAACTCTACCATCCACCTCCTCAAA
Seq C2 exon
ACAAGGTTGTCAGAAAGAGAAAACCAGTATACCCTGAGAAAGATCCAGATAAACAACTCAGAGAACACACTGAGAAGCCTCCTGTCTGACGTAGAGGAACTGGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000599-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.8)
A:
PF134761=AAA_23=PU(14.4=58.8),PF060089=Laminin_I=PU(12.7=56.9)
C2:
PF134761=AAA_23=FE(17.2=100),PF060089=Laminin_I=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCATGTGACAGCGTA
R:
CTTCTCATCCAGTTCCTCTACGT
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]