GgaEX6031188 @ galGal3
Exon Skipping
Gene
ENSGALG00000015001 | LAMA4
Description
NA
Coordinates
chr3:68387085-68388866:+
Coord C1 exon
chr3:68387085-68387180
Coord A exon
chr3:68388457-68388608
Coord C2 exon
chr3:68388750-68388866
Length
152 bp
Sequences
Splice sites
3' ss Seq
CACTTTTATTTTCTTATCAGGCT
3' ss Score
7.83
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CATGTAACTGTGGTGGGAGAATGTGTGACAGCCGGACTGGAGAATGCCTCGCAGATAGTCCTCTAGTTTCTACTGGCACAGACTGCCCAACCATCA
Seq A exon
GCTGCGATAAATGTATTTGGGATTTGACAGACGACATCCGGTTAGCTGTCCTGGCTATTGATGAAAGCAAATCAACTTTATTGAGCATCTCTACAGGTGTTGCAGCTCAGAAACGCTTGCATGACCTGAACCTCACTACTACCCATCTCCAG
Seq C2 exon
ACACAGGCGGCAATGTCCAAAAAAAAGGACCACTCCACACTTTGGACCATCCAGGTCGATGACGCTGTGGACGACATGAATGACCTCCTGAGAGAGGCAGAAAACCTGGATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015001-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.0)
A:
PF060089=Laminin_I=PU(11.6=60.8)
C2:
PF060089=Laminin_I=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAACTGTGGTGGGAGAATGTG
R:
TGGTCATCCAGGTTTTCTGCC
Band lengths:
210-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]