BtaEX6048510 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008817 | LAMA4
Description
Bos taurus laminin, alpha 4 (LAMA4), mRNA. [Source:RefSeq mRNA;Acc:NM_001205965]
Coordinates
chr9:38713876-38718228:+
Coord C1 exon
chr9:38713876-38713971
Coord A exon
chr9:38716158-38716309
Coord C2 exon
chr9:38718118-38718228
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACATGCCATTGTACCACCAGGCT
3' ss Score
6.61
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CGTGCAATTGTGGGGGAGGCCCATGTGACAGCATAACCGGAGAGTGCTTGGAAGAAGGTTTTGAGTCCCCTACAGGCACGGACTGCCCAACCATAA
Seq A exon
GCTGCGATAAATGCATCTGGGATCTGACTGATGACCTTCGGTTAGCAGCGCTCTCAATTGAAGAAAGCAAATCCGGCCTGCTGAGTGTGTCATCTGGTGCCGCAGCTCATAGGCACGTGAACGAAATCAACTCCACCATCTACCTCCTCAAA
Seq C2 exon
ACAAAATTGTCAGAAAGAGAAAACCAGTATGTCCTAAGAAAGATACAAATCAACAATGCTGAAAACACAATGAAAAGCCTTCAGTCTGACATGGAGGAATTAGCTGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008817-'15-9,'15-8,19-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.0)
A:
PF060089=Laminin_I=PU(11.0=56.9)
C2:
PF060089=Laminin_I=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAATTGTGGGGGAGG
R:
TCAGCTAATTCCTCCATGTCAGAC
Band lengths:
203-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]