MmuEX7004667 @ mm10
Exon Skipping
Gene
ENSMUSG00000019846 | Lama4
Description
laminin, alpha 4 [Source:MGI Symbol;Acc:MGI:109321]
Coordinates
chr10:39028622-39033121:+
Coord C1 exon
chr10:39028622-39028696
Coord A exon
chr10:39030433-39030584
Coord C2 exon
chr10:39033011-39033121
Length
152 bp
Sequences
Splice sites
3' ss Seq
CATTCCTATTTCATCTCCAGGCT
3' ss Score
9.02
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
TGTGCAACTGTGGGGGCGGCCCGTGTGACAGTGTAACCGGAGAGTGCTTGGAAGAAGGATTTGAAGTCCCTACAG
Seq A exon
GCTGTGATAAGTGCGTCTGGGACTTGACCGATGACCTGCGATTAGCAGCGCTCTCCATCGAAGAGAGCAAATCCGGGCTGCTGAGCGTGTCCTCTGGCGCTGCGGCGCATAGACACGTGACCGACATGAACTCTACCATCCACCTCCTCAGA
Seq C2 exon
ACAAGGCTGTCAGAAAGAGAAAACCAGTATACCCTAAGAAAGATACAGATAAACAACTCGGAGAACACACTGAGAAGCCTCCTGCCTGATGTAGAGGGACTCCATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019846-'7-16,'7-5,10-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
PF060089=Laminin_I=PU(11.0=56.9)
C2:
PF060089=Laminin_I=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCGTGTGACAGTGTAA
R:
CTTCTCATGGAGTCCCTCTACA
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types