DreEX6043402 @ danRer10
Exon Skipping
Gene
ENSDARG00000020785 | lama4
Description
laminin, alpha 4 [Source:ZFIN;Acc:ZDB-GENE-040724-213]
Coordinates
chr20:240246-241331:+
Coord C1 exon
chr20:240246-240329
Coord A exon
chr20:240987-241138
Coord C2 exon
chr20:241221-241331
Length
152 bp
Sequences
Splice sites
3' ss Seq
AACATCATTTGACTTCCCAGGCT
3' ss Score
5.76
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGCGACTGTCCAGAAGAGAACTGTGACCTGCACACAGGAGAGTGTCTGCCTGAGCTCTCGCAAATCAGCGAGTGTAATATCA
Seq A exon
GCTGTGACGCGTGTATCTGGAATCTGATCGGAGACATTCGCCAGTCCAACAAAACTCTGGACCAGGTGAGGAACAGCGTGCTGAACATTTCCACAGGAGCTGCAGCTAATGACAGACTGAAGTACTACAACTACACTGCGCACCAGCTACAG
Seq C2 exon
GCTCAGTTTAGGGGCTGGAGAAAGAATTATGCCATGATGAGTGGAGATACAGATGTCCTGGAAGAAGAAACTCAAAATCTGCTGACCGACATGGACCAGCTCGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020785-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(2.1=3.4)
A:
PF060089=Laminin_I=PU(12.1=62.7)
C2:
PF060089=Laminin_I=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGACTGTCCAGAAGAGAAC
R:
CTCTTCTGCGAGCTGGTCCAT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]