HsaALTD0003537-3/5 @ hg38
Alternative 5'ss
Gene
ENSG00000112769 | LAMA4
Description
laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]
Coordinates
chr6:112187450-112189205:-
Coord C1 exon
chr6:112189149-112189205
Coord A exon
chr6:112189110-112189148
Coord C2 exon
chr6:112187450-112187601
Length
39 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAAA
5' ss Score
-1.5
3' ss Seq
AAGAAATGTTTCACCTCCAGGCT
3' ss Score
6.74
Exon sequences
Seq C1 exon
TGTGCAACTGCGGGGGAGGCCCATGTGACAGTGTAACCGGAGAATGCTTGGAAGAAG
Seq A exon
GTTTTGAACCCCCTACAGGCATGGACTGCCCAACCATAA
Seq C2 exon
GCTGTGATAAGTGCGTCTGGGACCTGACTGATGACCTGCGGTTAGCAGCGCTCTCCATCGAGGAAGGCAAATCCGGGGTGCTGAGCGTATCCTCTGGGGCCGCCGCTCATAGGCACGTGAATGAAATCAACGCCACCATCTACCTCCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112769-31-35,32-35,33-35,34-35,36-35-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(1.8=3.8)
A:
NA
C2:
PF060089=Laminin_I=PU(11.7=60.8)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGTGACAGTGTAACCGG
R:
CGGATTTGCCTTCCTCGATGG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains