HsaALTD0003777-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159712506-159729175:+
Coord C1 exon
chr2:159712506-159712606
Coord A exon
chr2:159712607-159712661
Coord C2 exon
chr2:159729009-159729175
Length
55 bp
Sequences
Splice sites
5' ss Seq
GGGGTAATG
5' ss Score
4.85
3' ss Seq
TGAAAATTTTTATTTCACAGAAA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GGTTCTGCGCCGGATCCGGGAGAGGGGCGGGCGCCATTGTGCTTCGCTGCCGACTGCATTTCCTCAGTCACGGGCCTAGAACTCCAAGGAGAAAGGCGGCG
Seq A exon
GTGCGTGTTGCTGCGAGTGGGACGCGCACTGGTCGGTGCCGGCTCAGGAGCCGGG
Seq C2 exon
AAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-0-9,1-9,2-9-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTGCATTTCCTCAGTC
R:
GCACTTAAGGAGCTGGAAGGT
Band lengths:
132-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains