HsaEX0037887 @ hg38
Exon Skipping
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159711858-159729175:+
Coord C1 exon
chr2:159711858-159712382
Coord A exon
chr2:159714557-159714598
Coord C2 exon
chr2:159729009-159729175
Length
42 bp
Sequences
Splice sites
3' ss Seq
GATATTATGGTTTGTTTTAGGAA
3' ss Score
9.07
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TAAAAGACATGATCACCATCATTTACCAAGATTCTTACCACAAGGAAATGATCACAAGGTTGGACAAACAGGCTCCAACTCTTAAGGGAAAGGGCTTGCAGTTAGATCACACAGGGCGGGCAGGGAAGCAAGCGGGGAGGGGTAGGTCGGAAAAGGCAGTGCTTGATTCAATTCAACATTCACTGCGCCACTTACCAAGAGCCAGAAAAAGAAAAAAAAAAAAAAAAAAAGCCAACCAGCTGGGCGTTATTTCGAGCACGGGGCCCTGCAGGTGGGCCTGTGGGCGGGGACCCGGCGCCCGGGAGGGAAGGGGCTGGCTCAGAGACTATAGACGGGCGGGGACCGCCCCGGCCCGGGCCTCCAGCGCCCGGCGCCCGCACACTCGCCAGCCCAGCTGCCGGCACGCCGGCCAGCCAGCCGCTGCCGCTTACCAGTGGCGCCTCGCTGACTCCCCGGGGGCAGCTCTTCAACGGTTCCCGCAGTCAGAGCACCACCCCGCG
Seq A exon
GAATTCATGATTTGTTCCTGTAGCTGAAACATACATTGAATG
Seq C2 exon
AAAAATCTTTAAGAATGGAGTCTAAACCTTCAAGGATTCCAAGAAGAATTTCTGTTCAACCTTCCAGCTCCTTAAGTGCTAGGATGATGTCTGGAAGCAGAGGAAGTAGTTTAAATGATACCTATCACTCAAGAGACTCTTCATTTAGATTGGATTCTGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536_MULTIEX1-1/12=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCTTCAACGGTTCCC
R:
CCTCTGCTTCCAGACATCATCC
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development