HsaEX1022969 @ hg38
Exon Skipping
Gene
ENSG00000136536 | MARCH7
Description
membrane associated ring-CH-type finger 7 [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr2:159715681-159726268:+
Coord C1 exon
chr2:159715681-159715766
Coord A exon
chr2:159719010-159719117
Coord C2 exon
chr2:159726168-159726268
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTATTATTATTATTTTCAGAAA
3' ss Score
6.56
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CTTTCTGCCCTGGCATGAACTTACATGGTCAGAGCTGGTTTTTCCTGCCCTCAAATATATTTCTCTGACTCTACCGGTTAGACTAG
Seq A exon
AAAGTGTCTCACTCTGATGCAGTGGCGCGATCTCCGCTCACCACAACCTTCACCTCCCCAGGCTCAGGCAATTCTCCTACCTCAGTTTCCGAGTAGCTGGGATTACAG
Seq C2 exon
GGGAATGGAACTGGGGAAGAATCTGAAGCTCTACTACTGCTCCAGATACAGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136536-'9-8,'9-7,10-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGCATGAACTTACATG
R:
AACAAAACAAAACAAAACAAAACCTG
Band lengths:
154-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains