HsaALTD0004950-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000130714 | POMT1
Description
protein-O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:9202]
Coordinates
chr9:134378360-134379727:+
Coord C1 exon
chr9:134378360-134378460
Coord A exon
chr9:134378461-134378700
Coord C2 exon
chr9:134379576-134379727
Length
240 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTCCTCCCTTCTTTTCTAGGGC
3' ss Score
12.3
Exon sequences
Seq C1 exon
GAGTGCCGAGCGGCCTCACCCCCAACCGTCGGCCCAGTCGGACGGTTCCGAGGCGTTGCCGGGAGCCGGGCGCGGCTCTGTGTGGACTCGGAGAAACGCGG
Seq A exon
GTACATTTGGGGACACCGGGGACGAGAGCCCAGCCCGGACTTGGGGGAGTCCGTCAGTGCCGGACGCGGGTCCCTGGCTTGCGGACGGGCTGGGGCCGGGGGCGTCCCCGTCTTTCCGGAGCTGGGGGCGGGGTTCGGGCCCGGGCAGATGCGGCGTTCGGGCGGCCGAGCCCCGAAGTAAGAACTCCGTGGCGCGTGCAGCCCTAGGGAGGAAGGGCGTGCTGCGGGTGCAGTCTCAGG
Seq C2 exon
GGCGTCTGCCTGAGCCCGCTTTTCTACAAGATGTGGGGATTTTTGAAGCGCCCTGTAGTGGTGACGGCTGACATCAACTTGAGCCTTGTGGCCCTGACTGGGATGGGGTTACTGAGCCGGCTGTGGCGACTCACCTACCCGCGGGCTGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0236613=PMT=PU(17.1=51.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCCCCAACCGTCG
R:
GGGTAGGTGAGTCGCCACAG
Band lengths:
228-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)