HsaEX0049154 @ hg19
Exon Skipping
Gene
ENSG00000130714 | POMT1
Description
protein-O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:9202]
Coordinates
chr9:134378289-134381607:+
Coord C1 exon
chr9:134378289-134378752
Coord A exon
chr9:134379576-134379727
Coord C2 exon
chr9:134381501-134381607
Length
152 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCCCTTCTTTTCTAGGGC
3' ss Score
12.3
5' ss Seq
GGTGTAAGC
5' ss Score
4.48
Exon sequences
Seq C1 exon
ACGCGCGCTGCTGCCCGTCTGGCCCCGCAGGCTCGGTGAATCGAACGTTGAGCAGGGCGGTGGGTGGTGCGGAGTGCCGAGCGGCCTCACCCCCAACCGTCGGCCCAGTCGGACGGTTCCGAGGCGTTGCCGGGAGCCGGGCGCGGCTCTGTGTGGACTCGGAGAAACGCGGGTACATTTGGGGACACCGGGGACGAGAGCCCAGCCCGGACTTGGGGGAGTCCGTCAGTGCCGGACGCGGGTCCCTGGCTTGCGGACGGGCTGGGGCCGGGGGCGTCCCCGTCTTTCCGGAGCTGGGGGCGGGGTTCGGGCCCGGGCAGATGCGGCGTTCGGGCGGCCGAGCCCCGAAGTAAGAACTCCGTGGCGCGTGCAGCCCTAGGGAGGAAGGGCGTGCTGCGGGTGCAGTCTCAGGGTGAGGACGGAGCTGGGGCCGACGCAGCCTCGGGAGTTGGTGGACGGGACAG
Seq A exon
GGCGTCTGCCTGAGCCCGCTTTTCTACAAGATGTGGGGATTTTTGAAGCGCCCTGTAGTGGTGACGGCTGACATCAACTTGAGCCTTGTGGCCCTGACTGGGATGGGGTTACTGAGCCGGCTGTGGCGACTCACCTACCCGCGGGCTGTGGT
Seq C2 exon
TTTTGACGAAGTATATTATGGGCAGTACATCTCTTTTTACATGAAACAAATCTTCTTCTTGGATGACAGTGGGCCGCCATTTGGCCACATGGTGCTGGCCTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714_MULTIEX1-1/7=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0236613=PMT=PU(17.1=51.2)
C2:
PF0236613=PMT=PU(10.3=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCCGGAGCTGGGGG
R:
GGCCCACTGTCATCCAAGAAG
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)