DreEX6013226 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50464750-50465493:+
Coord C1 exon
chr5:50464750-50465028
Coord A exon
chr5:50465164-50465294
Coord C2 exon
chr5:50465387-50465493
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTTATTGTGTTTAGTCA
3' ss Score
3.97
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCTGGAACTTTTATTTTGAAATGTGGGCGACACAGCCCGGAAACACTGGTGAACAGACCGTTGCTTTATTTACAGTGTTTAGTGGCTTTATTTAAAGCGTAAAGTTGTCGTATATGCCTAAGCAATGGCATTATTTATTTGTTTTTATTTTTCCTGACCAATTCCAGTTTTAGCGAATATTTTTATTCATAATTTACTGCTAAAAGACAGCGCATGTGGTCGTAAAAGCAGCACTGTTCACCTATGATTGCGAAATTCCAGAGGAAAAACTGAATCAAG
Seq A exon
TCAGGATTGAGCATGCAGTGTGTTAAACTGCCCGTCAGTGTGACAGTGGAGATAAATGTGCTGCTGCTGGCGGTTACAGCACTTGCCCTCTTTACTCGACTTTATGGCATTCACTTTCCCAAAGCTGTAGT
Seq C2 exon
GTTTGATGAGGTTTATTATGGACAGTTCCTGTCATTGTACATGAAGCAGGTTTTTTTCATAGATGAAAGCGGTCCTCCTTTTGGACACATGATACTTGCTTTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0236613=PMT=PU(8.6=52.5)
C2:
PF0236613=PMT=FE(14.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAAGCAATGGCATTATTTATTTG
R:
CCAAAAGGAGGACCGCTTTCA
Band lengths:
248-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]