GgaEX0004978 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6221722-6223267:+
Coord C1 exon
chr17:6221722-6221845
Coord A exon
chr17:6222755-6222898
Coord C2 exon
chr17:6223161-6223267
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCTGTTCTTGAAGGCT
3' ss Score
7.71
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTAGCAAGAAACAAGGACGGTGGCACTGCATTTGGTGGTGGTGATGTGCTCGCATCCTGCTTTGCTCACACCTGATGAAAGCCATGCAAAAGAATTTATTCCAGTAGCTTTTGGTGATACTGAG
Seq A exon
GCTTGGACAGACCTTTGACAGGATGTTGGGATTTCTGAAGAACCCAGTTGTGGTTACTGCAGAGATAAATCTCAACCTTGTGGTGCTGACTGTCATGGGATTAATAAGCCGTCTATGGGGGCTTTCCTATCCACGTGCTGTTGT
Seq C2 exon
TTTTGATGAAGTTTATTACGGCCAATTTGTTTCCCTCTACATGAAGAGAATCTTCTTTGTGGATGACAGCGGCCCACCGCTTGGCCATATGCTGCTGGCTTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0236613=PMT=PU(11.4=51.2)
C2:
PF0236613=PMT=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAAACAAGGACGGTGG
R:
CCAGCAGCATATGGCCAAGC
Band lengths:
220-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]