GgaEX0004978 @ galGal3
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6848665-6850210:+
Coord C1 exon
chr17:6848665-6848788
Coord A exon
chr17:6849698-6849841
Coord C2 exon
chr17:6850104-6850210
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCTGTTCTTGAAGGCT
3' ss Score
7.71
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTAGCAAGAAACAAGGACGGTGGCACTGCATTTGGTGGTGGTGATGTGCTCGCATCCTGCTTTGCTCACACCTGATGAAAGCCATGCAAAAGAATTTATTCCAGTAGCTTTTGGTGATACTGAG
Seq A exon
GCTTGGACAGACCTTTGACAGGATGTTGGGATTTCTGAAGAACCCAGTTGTGGTTACTGCAGAGATAAATCTCAACCTTGTGGTGCTGACTGTCATGGGATTAATAAGCCGTCTATGGGGGCTTTCCTATCCACGTGCTGTTGT
Seq C2 exon
TTTTGATGAAGTTTATTACGGCCAATTTGTTTCCCTCTACATGAAGAGAATCTTCTTTGTGGATGACAGCGGCCCACCGCTTGGCCATATGCTGCTGGCTTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0236613=PMT=PU(8.5=51.2)
C2:
PF0236613=PMT=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAAACAAGGACGGTGG
R:
CCAGCAGCATATGGCCAAGC
Band lengths:
220-364
Functional annotations
There are 0 annotated functions for this event