MmuEX0036345 @ mm10
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32236590-32240533:+
Coord C1 exon
chr2:32236590-32236741
Coord A exon
chr2:32237360-32237511
Coord C2 exon
chr2:32240427-32240533
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTTCTTTCCCTCTTTTCCAGGGA
3' ss Score
11.24
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGTCGGCCGCGTAGACACAACTAGTTGAGCGTCGATCCGTGGCCGCTGCAGAGTAATCGAGCGGCCTCGCCCCCAACGGTCGATCCTGCCTGGCGGTTCGCAGGCCTGGCTCCACATGGGGAGCCACTCTACGGGACTCGAAGAAACGCTC
Seq A exon
GGAGTCCTCCCGAGCTGGCTTTTCTGCAAAATGTTAAGATTTTTGAAACGGCCTCTAGTGGTGACTGTTGACATCAATTTGAACTTGGTAGCTCTGACTGGCCTGGGACTACTTACCCGACTATGGCAACTCTCCTACCCTCGGGCTGTGGT
Seq C2 exon
TTTCGATGAAGTATATTATGGGCAGTACATTTCCTTCTACATGAAGCGCATCTTCTTTCTGGATGACAGTGGGCCACCATTTGGCCACATGCTACTGGCCTTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0236613=PMT=PU(16.3=41.2)
C2:
PF0236613=PMT=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCGTAGACACAACTAGTT
R:
CCTAAGGCCAGTAGCATGTGG
Band lengths:
251-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types