BtaEX6046923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101650163-101652356:+
Coord C1 exon
chr11:101650163-101650349
Coord A exon
chr11:101651003-101651158
Coord C2 exon
chr11:101652250-101652356
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTCTGCTTTCCCAGGGC
3' ss Score
10.32
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCAGGCGCGCTGCACCCTCCCTGGCAGGCGCCCCTGGCGCGGCGAGTTGAGCGTCGAGCGGGCCAGTGGGCAACAAAGAGTGCCGAGCGGCCTCACCCCCTACCAACGGTCGGCCTAGCCGCTCACCCCCGCCCCAGGCAGGTCTGAGGCGCAGGGAGCGGCTCTGCGGGGACCTGAGGAAACAGCA
Seq A exon
GGCATCCTCCTCCCCCGGCCGGCTTTTCTGCAAGATGTTGGGGTTCTTGCAGCAGCCTGTGATGGTGACCGCTGAGGTGAACTTGAATATGGTAGCTCTGACCGCGGTGGGATTGCTGAGCCGACTATGGCAGCTTGCCTATCCAAGGGCCGTGGT
Seq C2 exon
TTTTGATGAAGTGTATTACGGGCAGTACATCTCTTTTTATATGAAGCGGATCTTCTTTTTGGATGGCAGTGGACCACCGTTTGGCCACATGCTTTTGGCCTTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805-'1-3,'1-0,5-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0236613=PMT=PU(25.3=51.2)
C2:
PF0236613=PMT=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGTTGAGCGTCGAG
R:
CTCCCAAGGCCAAAAGCATGT
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]