RnoEX0068245 @ rn6
Exon Skipping
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11254026-11257548:+
Coord C1 exon
chr3:11254026-11254149
Coord A exon
chr3:11254774-11254925
Coord C2 exon
chr3:11257442-11257548
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTTCTTCCCGTCTTTTCCAGGGT
3' ss Score
11.35
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CGAAAAATTAGTTGGGCGCTCCGGAGTAATCGAGCAGCCTCTCCCCCAACGGTCGAACCAGCTTGGCGGGTTGCAGGCCTGGCTCCACATGGGGAACCGCTCAATGGGACGCGAAGATACGCTT
Seq A exon
GGTGTCCTCCCGAGCTTGCTTTTCTGCAAAATGTTGAGATTTTTGAAACGGCCTCTAGTGGTGACTATTGACATCAATTTGAATTTGGTGGCTCTGACTGTCCTGGGACTACTTACCCGGTTATGGCAACTCTCCTACCCTCGGGCTGTGGT
Seq C2 exon
TTTTGATGAAGTGTATTACGGGCAGTACATCTCCTTTTACATGAAGCGTGTCTTCTTCCTGGATGACAGTGGACCACCGTTCGGCCATATGCTGCTAGCCTTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477-'0-5,'0-1,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0236613=PMT=PU(23.9=41.2)
C2:
PF0236613=PMT=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTAGTTGGGCGCTCCGG
R:
CTAGCAGCATATGGCCGAACG
Band lengths:
219-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]