HsaALTD0005308-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15565468-15567054:-
Coord C1 exon
chr19:15566944-15567054
Coord A exon
chr19:15566915-15566943
Coord C2 exon
chr19:15565468-15565704
Length
29 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGA
5' ss Score
3.85
3' ss Seq
CATTGCCTCTTCTGCACCAGCTG
3' ss Score
5.96
Exon sequences
Seq C1 exon
GTTGTGCGGCGTCTCTGTGCTTCTACTGAGGACTGTGAAGTGGACCCCAGCAAATGTCCAGCCTCGGAGCTGCCAGAGCACCAGGCCAGACTTCGGAACAGCTGCGAGGAG
Seq A exon
GTCTTCGAAACCATTATCCATTCCTACGA
Seq C2 exon
CTGGTTCCCTGCGGAGCTGGGCATCGTGTTCTCAAGCTGGCGAGAAGCATGTAAAGAACGTGGCTCTGAGGTGCTGGGCCCCCGACTGGTGTGCGCCTCCCTCTTCCTGCGGCTCCTGTGCCCTGCCATCCTGGCACCCAGCCTCTTTGGTTTGGCACCAGACCATCCAGCACCCGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTCGCCAACCGTGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-10-11,11-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGACCCCAGCAAATGTC
R:
TACATGCTTCTCGCCAGCTTG
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)