RnoALTD0025093-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14407412-14408573:-
Coord C1 exon
chr7:14408466-14408573
Coord A exon
chr7:14408429-14408465
Coord C2 exon
chr7:14407412-14407648
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTA
3' ss Score
6.51
Exon sequences
Seq C1 exon
GCCAGGTTGTGCGGAGTCTCTGTGCCTCCACCGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCGGAGCTGCCAAAATGCCAAGCTAGACTGCGAAGCAGTT
Seq A exon
GTGAGGAGGTTTTTGAAAACATCATCCACTCTTACAA
Seq C2 exon
CTATTTCCCAGCAGAGCTGGGCACCGTGTTCTCAAATTGGCGGGAAGCATGCAAAGCACGAGGCTCTGAGGCACTGGGCCCCCGGCTGGTGTGTGCTTCTCTCTTCCTAAGGCTCCTATGCCCCGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCCGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAATCTTGCCAACTGTGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167-16-12,17-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGAGGACTGTGAAGT
R:
GCCAATTTGAGAACACGGTGC
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]