MmuALTD0011593-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32530983-32532164:-
Coord C1 exon
chr17:32532057-32532164
Coord A exon
chr17:32532020-32532056
Coord C2 exon
chr17:32530983-32531219
Length
37 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTG
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGCAGGTTGTGCGGTGTCTCTGTGCCTCCACTGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCAGAGCTGCCAAAACACCAAGCTAGACTGCGAGACAGCT
Seq A exon
GTGAGGAGGTTTTTGAAAACATCATCCATTCTTACAA
Seq C2 exon
CTGTTTCCCAGCAGAGCTGGGCTCCGTGTTCTCAAGTTGGCGTGAAGCATGCAAAGCACGAGGCTCTGAGGCCCTGGGCCCCCGGCTGGTGTGTGCTTCCCTCTTCCTGAGGCTTTTATGCCCTGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCAGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAACCTCGCCAACTGTGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-13-14,14-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(37.1=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACTGTGAAGTGGACCC
R:
TGCTTCACGCCAACTTGAGAA
Band lengths:
126-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: