HsaALTD0006366-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160025761-160027316:+
Coord C1 exon
chr2:160025761-160025862
Coord A exon
chr2:160025863-160025883
Coord C2 exon
chr2:160027035-160027316
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTTTTTTCTTCTTTTGAAGCAC
3' ss Score
9.42
Exon sequences
Seq C1 exon
CAACAAGCTCAACCAAATTGGAAGATCTGAGTTATTTAGACGGGCAGAGAAATGCTCCTCTACGGACGTCAATTAGATTACCATGGCACAATACGGCCGGAG
Seq A exon
GTAGGGCACAGGAAGTTAAAG
Seq C2 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCCTTGTTGTTTGAAGTACCAAGCATAACAACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGCGCGGTGGTGGTTGGCAATGTGGGATTTGGGAAGACGGCAATCATTTCCAAGTTGGTGGCCCTGAGCTGCCACGGAAGCCGCATGAGGCAGATTGCTTCCAACAGCCCGGGTTCATCACCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131911=AAA_16=WD(100=66.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCTCTACGGACGTCAAT
R:
GCTTGGTACTTCAAACAACAAGGG
Band lengths:
115-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)