RnoALTD0030092-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45863234-45864515:+
Coord C1 exon
chr3:45863234-45863335
Coord A exon
chr3:45863336-45863356
Coord C2 exon
chr3:45864234-45864515
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TTTGTTTGTTTGTTTTGAAGCAC
3' ss Score
7.04
Exon sequences
Seq C1 exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGCTATTTAGACGGACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTACGGCTGGAG
Seq A exon
GTAGGGCACAGGAAGTTAAAG
Seq C2 exon
CACGGTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTTGCTTTTCGAAGTGCCAAGCATCACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAACAGATAGAAGAGAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAAATGTAGGGTTTGGGAAGACAGCCATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCGCATGAGACAGATAGCATCCAGCAGCCCCAGTTCATCTCTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-42-19,43-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131911=AAA_16=PU(97.1=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCGGACGTCGATTAGA
R:
GCTTGGCACTTCGAAAAGCAA
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]