RnoEX0088526 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45857842-45864515:+
Coord C1 exon
chr3:45857842-45858105
Coord A exon
chr3:45863234-45863335
Coord C2 exon
chr3:45864234-45864515
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTCTGCTTCCCTATTGCAGCGA
3' ss Score
9.97
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCTGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCAAGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq A exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGCTATTTAGACGGACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTACGGCTGGAG
Seq C2 exon
CACGGTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTTGCTTTTCGAAGTGCCAAGCATCACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAACAGATAGAAGAGAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAAATGTAGGGTTTGGGAAGACAGCCATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCGCATGAGACAGATAGCATCCAGCAGCCCCAGTTCATCTCTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'41-19,'41-18,42-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.057 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(97.1=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGGTCCGGTCCCTTAT
R:
ACCCTACATTTCCCACCACCA
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]