DreEX6038731 @ danRer10
Exon Skipping
Gene
ENSDARG00000089190 | TANC1 (2 of 2)
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr9:52574671-52617511:-
Coord C1 exon
chr9:52617239-52617511
Coord A exon
chr9:52581278-52581397
Coord C2 exon
chr9:52574671-52574958
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGTTTGTCTGCAGCGA
3' ss Score
10.78
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CCACCATCACCAGCTCCTCTGAGAATGAGGAGCGCAGCGGCTCCAGCCTGGAGTGGAGTAAAGAGGGCAGTATAAGGAGCTGCGGTCAGCATGTTCTGGGACAGACGGCCACGCGGACAGACACATGCTCTCCGGTGGCCGAGGAGGAACCATCAGCGTCTGGGACAGGCTTACGGATCGTCCCCAACACCAAGAAGAACTCAGAAGGACCCGTCCAGTATACCACACAGAACCCGTCCAGCCTGATGATGCCTCGACCAAACTCAGTGGCAG
Seq A exon
CGACGAGCTCCACTAAGCTGGAGGATCTCAGTTTTCTTGATGAACAGCGAAACACCCCCCTGCGCACCTCCATCCGCCTGCCCTGGCACAACACCGGCGGCAGAGCTCCACACGACAAAG
Seq C2 exon
CTTGCTTTGCTCCGTACAAGCCCACCGACATCATGCTTAAGCCGCTGCTGTTTGAGGTTCCCAGCATCACCACAGACTCTGTGTTCGTGGGCCGTGATTGGCTGTTCCAGCAACTGGAGGATGACTTGAGCCCCAGCCAATCAGGTGAGAGCAGCAGCTCCGGCTCCATTCTGGTCGGCAACGTGGGCTTCGGAAAAACCGCCATCATCTCCCGCCTGGTGGCCCTCAGCTGCCATGGAGGACGCATGCGGCAGATTGCATCCAACAGTCCCACTGCATCGCCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089190-'8-9,'8-7,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=0.732 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(32.4=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTATAAGGAGCTGCGGTC
R:
TTAAGCATGATGTCGGTGGGC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]