MmuEX0046253 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59785324-59791880:+
Coord C1 exon
chr2:59785324-59785587
Coord A exon
chr2:59790776-59790877
Coord C2 exon
chr2:59791599-59791880
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCTTTCATATTGCAGCGA
3' ss Score
8.38
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CCACAATCACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAACAGAGACGGAAGCCTAAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCAGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCCGCGGAGAGCGTGCTGCCCAAGGCGGAACCCTCAGCCGGAGATGGTCCGGTGCCCTATCCTCAGAGCTCTGGCTCGCTCATAATGCCACGGCCCAACTCAGTTGCAG
Seq A exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGTTATTTGGACGGACAGAGAAATGCTCCTCTTCGGACATCAATTAGATTGCCCTGGCACAATACGGCTGGAG
Seq C2 exon
CACGGTTTGCTCCCTACAAACCTCAGGAGATCCTGTTGAAGCCCTTGCTGTTTGAAGTACCAAGCATCACAACTGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCACCAGATAGAGGAAAACTTGAGGAACACAGAGCTGGCAGAAAACAGAGGAGCCGTGGTCGTGGGGAGCGTAGGATTTGGGAAGACAGCCATCATTTCTAAGCTGGTGGCACTGAGCTGTCACGGAAGCCGCATGAGACAGATCGCATCCAGCAGTCCCAGTTTGTCACCCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'63-39,'63-38,64-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.351 C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(97.1=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTATCCTCAGAGCTCT
R:
CTTCCCAAATCCTACGCTCCC
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types