BtaEX6009651 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37293860-37301218:-
Coord C1 exon
chr2:37300955-37301218
Coord A exon
chr2:37295234-37295356
Coord C2 exon
chr2:37293860-37294141
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTTCGGTTTAATATTGCAGCAA
3' ss Score
6.08
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCACAATTACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAGGACGGAAGCCTAAGGTTAGGGGTACAGAAGGGAGTGCTCCATGACCGCAGGGCAGATAATTGCTCCCCAGTGGCAGAAGAGGAGCCCCCTGGGCCAGCGGAGAGCGTGCTGCCCAAAGCCGAAGCCTCAGTTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCCAGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq A exon
CAACGAGCTCAACCAAATTGGAAGACCTGAGTTATTTGGACGGACAGAGAAATGCTCCCCTTCGGACATCAATTAGGTTACCGTGGCACAATACAGCTGGAGGTAGGGCACAGGAAGTTAAAG
Seq C2 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCATTATTGTTTGAAGTACCAAGCATAACCACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGACAGAAAACAGAGGCGCGGTGGTTGTTGGAAACGTGGGCTTTGGGAAGACGGCTATCATTTCTAAGTTGGTGGCACTGAGCTGCCATGGAAGCCGCATGAGGCAGATCGCTTCCAACAGCCCCAGCTCATCAACGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'22-25,'22-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.429 C2=0.189
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(80.7=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGATAATTGCTCCCCAG
R:
GCCAATCCCTTCCCACAAACA
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]