HsaEX0063554 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159163283-159170805:+
Coord C1 exon
chr2:159163283-159163546
Coord A exon
chr2:159169250-159169372
Coord C2 exon
chr2:159170524-159170805
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTTCAGTTTAATATTACAGCAA
3' ss Score
4.07
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CCACAATTACAAGTTCATCCGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAAGATGGAAACCTAAGATTAGGGGTTCAGAAGGGAGTGCTTCATGACCGCAGGGCAGATAACTGCTCCCCAGTGGCAGAAGAGGAGACCACCGGGTCAGCAGAGAGCACGCTGCCCAAAGCAGAATCCTCAGCTGGAGATGGTCCAGTCCCTTATTCTCAGGGCTCCAGCTCACTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq A exon
CAACAAGCTCAACCAAATTGGAAGATCTGAGTTATTTAGACGGGCAGAGAAATGCTCCTCTACGGACGTCAATTAGATTACCATGGCACAATACGGCCGGAGGTAGGGCACAGGAAGTTAAAG
Seq C2 exon
CACGATTTGCTCCCTACAAGCCACAAGACATTTTGTTGAAACCCTTGTTGTTTGAAGTACCAAGCATAACAACAGACTCTGTGTTTGTGGGAAGGGATTGGCTCTTTCACCAGATAGAAGAAAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGCGCGGTGGTGGTTGGCAATGTGGGATTTGGGAAGACGGCAATCATTTCCAAGTTGGTGGCCCTGAGCTGCCACGGAAGCCGCATGAGGCAGATTGCTTCCAACAGCCCGGGTTCATCACCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-15/15=14-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.452 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=WD(100=66.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGCTCCAGCTCACTAA
R:
ATTGCCGTCTTCCCAAATCCC
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development