GgaEX7006239 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36003234-36006326:+
Coord C1 exon
chr7:36003234-36003491
Coord A exon
chr7:36004761-36004886
Coord C2 exon
chr7:36006045-36006326
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCAATTTTTTAATACTGTAGCAA
3' ss Score
3.72
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CAACTGTAACAAGTTCATCAGAAAATGATGATCGTAGTGGATCCAGTTTGGAATGGAGCAAGGATGGGAGTCTCAGAGCTGGAGCACATCGAGGAATTGGTCACGATCGAAGAACTGACAATTGTTCACCAGTTGCAGAAGAGGAGGCTGTTGGATCTGCTGAGAATTTGCCAAAGGAAGTACCAACAGGAGAGGGTCCTGTTCCTTATACTCAGAGTTCTGGATCTTTAATAATGCCTCGTCCAAACTCTGTTGCAG
Seq A exon
CAACAAGTTCTACCAAATTGGAAGATCTGAGTTATTTGGATGGACAAAGAAATGCTCCTTTACGCACTTCAATTCGCTTACCTTGGCACAACACTGCTGGTGGAAGAGTGCAGCAGGAAAACAAAG
Seq C2 exon
CACGTTTTGTCACCTATAAGCCTCAAGACATTTTGCTAAAGCCATTACTGTTTGAAGTGCCAAGCATAACGACAGACTCAGTGTTTGTTGGAAGAGAATGGCTGTTTCAGGCAATTGAAGAAAAATTGAAGAATACAGATCTGGCAGAGAGCAAAGGAACAGTTATTACTGGGAATGTGGGATTTGGGAAGACTGCTATTATTTCCCGTCTGGTGGCACTTAGTTGCCATGGAAGTCGCATGAGGCAAATAGCTTCAAACAGTCCTAATTCATCCCCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.512 C2=0.168
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(82.7=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTCCAAACTCTGTTGCA
R:
ATGGCAACTAAGTGCCACCAG
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]