MmuEX0046253 @ mm9
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59623381-59631304:+
Coord C1 exon
chr2:59623381-59623644
Coord A exon
chr2:59628833-59628934
Coord C2 exon
chr2:59631153-59631304
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCTTTCATATTGCAGCGA
3' ss Score
8.38
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CCACAATCACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAACAGAGACGGAAGCCTAAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCAGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCCGCGGAGAGCGTGCTGCCCAAGGCGGAACCCTCAGCCGGAGATGGTCCGGTGCCCTATCCTCAGAGCTCTGGCTCGCTCATAATGCCACGGCCCAACTCAGTTGCAG
Seq A exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGTTATTTGGACGGACAGAGAAATGCTCCTCTTCGGACATCAATTAGATTGCCCTGGCACAATACGGCTGGAG
Seq C2 exon
CCTCAGATCCCACTCAGGACCTTCCTGGTACTCCATTACTCTCACCAAGTTCTTCTACAAGTGCTCTCAGTGTGACCAGAACACCTGCTGGGCCTGGGACTGCTGACAGCCAGAGACCGAGAGAGGATGCGGTGAAATACCTCGCTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168_MULTIEX1-8/25=7-10
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=0.312 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PD(1.4=2.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTGCTTCATGACCGAAG
R:
TCTGGTCACACTGAGAGCACT
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: