DreEX0077221 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11854983-11865489:-
Coord C1 exon
chr6:11865229-11865489
Coord A exon
chr6:11858200-11858325
Coord C2 exon
chr6:11854983-11855267
Length
126 bp
Sequences
Splice sites
3' ss Seq
GAGTCTCTTTCTCTCTGCAGCCA
3' ss Score
9.37
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
CAACAGTCACCAGTTCTAGTGAGAATGAAGAGCGCTGTGGATCTAGTCTGGAGTGGGCGAAAGATGGAGGTGCGGGTGTAAGAGGCGAGAGCGGGCGTAGCTGTATTCCCATCACTCCAGAGGAGCCCACGGTCTCTAGTGAAGTTCAACCGAGGACAAGCAGCACAGGCGGGGCGGCACCTGTTGTGACATCACCACTGGATGGACCAATCACGTATCACAGTGCCTCTTTGGTTATGCCACGCCCAAATTCTGTGGCAG
Seq A exon
CCACCAGCAGCACAAAGCTGGAGGAGCTGCGCTATCTGGACGAGCAGAGGAACGCTCCGCAGCGCTCCTCCATGCGTTTGCCCTGGCATGGAGCTCACACGGGCGGCCGCAGCCAAGAGACCAAAG
Seq C2 exon
CTCGTCTCACACCCTACAAACCAGTGGACATCATGCTTAAACCCCTGCTGTTTGAGGTCCCCAGTGTCTCTATGGATGCTGTGTTTGTGGGCCGTGATTGGCTGTTTCAGCGGCTGGAGGAGGTGCTTGCGGGTGGAGGAGATGCCGATGAGGGTAAAGGCGCTGTGATCATCGGTAACGTCGGTTTTGGAAAGACAGCAGTGATTTCACGGCTGGTGGCTCTCAGTTGTCATGGTGGACGAATGAGACAGATCGCCTCCAGCAGTCCTGAAGCTACACCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.930 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131911=AAA_16=PU(70.8=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTATGCCACGCCCAAATT
R:
CCACCAGCCGTGAAATCACTG
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]