MmuALTD0013981-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59790776-59791880:+
Coord C1 exon
chr2:59790776-59790877
Coord A exon
chr2:59790878-59790898
Coord C2 exon
chr2:59791599-59791880
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TTTGTTTGTTTGTTTTGAAGCAC
3' ss Score
7.04
Exon sequences
Seq C1 exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGTTATTTGGACGGACAGAGAAATGCTCCTCTTCGGACATCAATTAGATTGCCCTGGCACAATACGGCTGGAG
Seq A exon
GTAGGGCACCGGAAGTTAAAG
Seq C2 exon
CACGGTTTGCTCCCTACAAACCTCAGGAGATCCTGTTGAAGCCCTTGCTGTTTGAAGTACCAAGCATCACAACTGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCACCAGATAGAGGAAAACTTGAGGAACACAGAGCTGGCAGAAAACAGAGGAGCCGTGGTCGTGGGGAGCGTAGGATTTGGGAAGACAGCCATCATTTCTAAGCTGGTGGCACTGAGCTGTCACGGAAGCCGCATGAGACAGATCGCATCCAGCAGTCCCAGTTTGTCACCCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-64-39,65-39-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF131911=AAA_16=PU(97.1=70.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGACAGAGAAATGCTCC
R:
GCAAGGGCTTCAACAGGATCT
Band lengths:
113-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types