HsaALTD0006441-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67808797-67809298:+
Coord C1 exon
chr11:67808797-67808813
Coord A exon
chr11:67808814-67808855
Coord C2 exon
chr11:67809220-67809298
Length
42 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CCTCCGTGTGGCACCCACAGCTC
3' ss Score
7.25
Exon sequences
Seq C1 exon
CGGCTGCCTACACCTGC
Seq A exon
GTGAGTCGGCTGGGCGAGCTGGGCCTCGTGGAGTTCAGAGAC
Seq C2 exon
CTCAACGCCTCGGTGAGCGCCTTCCAGAGACGCTTTGTGGTTGATGTTCGGCGCTGTGAGGAGCTGGAGAAGACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(0.7=8.0)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(13.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)