HsaALTD0006441-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68041268-68041831:+
Coord C1 exon
chr11:68041268-68041346
Coord A exon
chr11:68041347-68041388
Coord C2 exon
chr11:68041753-68041831
Length
42 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CCTCCGTGTGGCACCCACAGCTC
3' ss Score
7.25
Exon sequences
Seq C1 exon
GACCATGGGCTCCATGTTCCGGAGCGAGGAGGTGGCCCTGGTCCAGCTCTTTCTGCCCACAGCGGCTGCCTACACCTGC
Seq A exon
GTGAGTCGGCTGGGCGAGCTGGGCCTCGTGGAGTTCAGAGAC
Seq C2 exon
CTCAACGCCTCGGTGAGCGCCTTCCAGAGACGCTTTGTGGTTGATGTTCGGCGCTGTGAGGAGCTGGAGAAGACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-9-4,10-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(0.7=8.0)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(13.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCTCCATGTTCCGGA
R:
TCTTCTCCAGCTCCTCACAGC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development