RnoALTD0030351-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219136711-219137194:-
Coord C1 exon
chr1:219137116-219137194
Coord A exon
chr1:219137074-219137115
Coord C2 exon
chr1:219136711-219136789
Length
42 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
CCTATGTGTATCCATCACAGCTC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GATCATGGGCTCCATGTTCCGGAGTGAAGAGGTGGCCTTGGTCCAGCTCCTGTTGCCCACAGCATCTGCCTACAACTGT
Seq A exon
GTGAGCCAGCTGGGTGAGCTGGGCCTCGTGGAGTTTAGAGAC
Seq C2 exon
CTCAACGAATCGGTGAGTGCCTTCCAGAGACGCTTCGTGGTAGAGGTCCGGCGCTGCGAGGAGCTGGAGAAGACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220-4-3,5-3,6-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(1.6=33.3)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTTCCGGAGTGAAGAGG
R:
AAGGTCTTCTCCAGCTCCTCG
Band lengths:
145-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]