HsaALTD0006873-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39178686-39179201:+
Coord C1 exon
chr3:39178686-39178744
Coord A exon
chr3:39178745-39178878
Coord C2 exon
chr3:39178977-39179201
Length
134 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
ACTTCCTACCTGGTGTGTAGAAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
CTACATGGAGAAGAAGGAGTTGGAGCAGCAGGGTGTGAGCACCGCCGAGAAACTGCTGC
Seq A exon
GTGAGTTTTACCCACATTCAGACTCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAG
Seq C2 exon
AAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCACAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCTGGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-41-37,42-37-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PD(60.0=44.0),PF134141=TPR_11=PU(48.5=44.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGAGTTGGAGCAGCAG
R:
CAGCAGTTCTAAGGCGAGGTC
Band lengths:
250-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)