HsaINT0174162 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39178686-39179201:+
Coord C1 exon
chr3:39178686-39178878
Coord A exon
chr3:39178879-39178976
Coord C2 exon
chr3:39178977-39179201
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
ACTTCCTACCTGGTGTGTAGAAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
CTACATGGAGAAGAAGGAGTTGGAGCAGCAGGGTGTGAGCACCGCCGAGAAACTGCTGCGTGAGTTTTACCCACATTCAGACTCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAG
Seq A exon
GTGTGGCTGGTGGGGACTGGCGGGCATGGGCAGGTGGCAGGGCCGAGAAGACCAGGCGGCCAACACGTGCTGACGTCCACTTCCTACCTGGTGTGTAG
Seq C2 exon
AAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCACAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCTGGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(36.4=30.8)
A:
NA
C2:
PF145591=TPR_19=PD(60.0=44.0),PF134141=TPR_11=PU(48.5=44.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCTTCATCCAGATAGC
R:
CAGCTCTTCTCCAGGTCCTCA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)