RnoINT0157556 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128654472-128654981:+
Coord C1 exon
chr8:128654472-128654664
Coord A exon
chr8:128654665-128654756
Coord C2 exon
chr8:128654757-128654981
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
TGCTCCCCACGGGTGTGCAGAAG
3' ss Score
2.77
Exon sequences
Seq C1 exon
CTCTGCCAGTAGGAAAGAGTCTCAGCAGCACGGGGTGCGCACTGCAGAGAAGCTACTTCGGGAATTTTACCCACACTCGGAGTCCGGGCAGACCCAGCTGCGGCTGCTGCAGAGCCTCTGCCTGCTAGCCACCAGGGAGAAGGCGAACATAGAGGTGGCTCTGGGGGCCTTCATCGAGATGGCCCAGGCTGAG
Seq A exon
GTGCGAGGGCTAGGGACTGGTTTCGGTGGGCAGGGGTCAAGATGGAGGTGACTGCCAAAGTGCCCCAATGTCTGCTCCCCACGGGTGTGCAG
Seq C2 exon
AAGGACAACATCCCTGCACTGCTGGCCATGGCGCAGGCCTACGTCCTCCTGAAGCAAGTCCCCAAGGCCCGAACGCAGCTGAAGCGCCTGGCCAAAGTCCCATGGATGCTGGACGAGGCCGAAGACCTGGAAAAGAGCTGGCTTCTGTTGGCAGACATCTACTGCCAAGGCGGCAAATTCGACCTGGCCTTGGAGCTGCTGCGCCGCTGCTTGCAGTACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(59.5=76.9)
A:
NA
C2:
PF145591=TPR_19=PD(38.1=42.7),PF134141=TPR_11=PU(48.5=44.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATAGAGGTGGCTCTGGGG
R:
CTTTTCCAGGTCTTCGGCCTC
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]