HsaINT0174162 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39137195-39137710:+
Coord C1 exon
chr3:39137195-39137387
Coord A exon
chr3:39137388-39137485
Coord C2 exon
chr3:39137486-39137710
Length
98 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
ACTTCCTACCTGGTGTGTAGAAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
CTACATGGAGAAGAAGGAGTTGGAGCAGCAGGGTGTGAGCACCGCCGAGAAACTGCTGCGTGAGTTTTACCCACATTCAGACTCCAGCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAG
Seq A exon
GTGTGGCTGGTGGGGACTGGCGGGCATGGGCAGGTGGCAGGGCCGAGAAGACCAGGCGGCCAACACGTGCTGACGTCCACTTCCTACCTGGTGTGTAG
Seq C2 exon
AAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCACAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCTGGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(48.5=44.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGCTTCATCCAGATAGC
R:
CAGCTCTTCTCCAGGTCCTCA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains