HsaALTD0007364-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35478032-35478340:-
Coord C1 exon
chr1:35478269-35478340
Coord A exon
NA
Coord C2 exon
chr1:35478032-35478182
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
3' ss Seq
ATGTTATTTTATTTTAATAGAAT
3' ss Score
7.37
Exon sequences
Seq C1 exon
AACTTATTTTCCCACCTCCCAATAGTGTGGTTTCATCATCATGCTCAAATATTTCAACCAAGGACCGTGGTT
Seq A exon
NA
Seq C2 exon
AATTCTGCCCAAATTCCTCCATATGCCCTGGGGAAGTCATTGAGGCCCTCAGCTGAAATGATTGAGACTACAAATGATTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACTGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-16-15,17-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=62.7),PF064679=zf-FCS=PU(5.0=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCTCCCAATAGTGTGG
R:
GACTTCCCCAGGGCATATGGA
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)