HsaEX0072927 @ hg19
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35478032-35480489:-
Coord C1 exon
chr1:35480298-35480489
Coord A exon
chr1:35478269-35478340
Coord C2 exon
chr1:35478032-35478182
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTGTTGTCTGGAAGAAC
3' ss Score
3.58
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
Exon sequences
Seq C1 exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
Seq A exon
AACTTATTTTCCCACCTCCCAATAGTGTGGTTTCATCATCATGCTCAAATATTTCAACCAAGGACCGTGGTT
Seq C2 exon
AATTCTGCCCAAATTCCTCCATATGCCCTGGGGAAGTCATTGAGGCCCTCAGCTGAAATGATTGAGACTACAAATGATTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACTGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-'15-15,'15-14,16-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=62.7),PF064679=zf-FCS=PU(5.0=3.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCACCATGAACTGTTGTGA
R:
TTTCAGCTGAGGGCCTCAATG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)