HsaEX0072927 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35012431-35014888:-
Coord C1 exon
chr1:35014697-35014888
Coord A exon
chr1:35012668-35012739
Coord C2 exon
chr1:35012431-35012581
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTGTTGTCTGGAAGAAC
3' ss Score
3.58
5' ss Seq
GTTGTAGGT
5' ss Score
2.38
Exon sequences
Seq C1 exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
Seq A exon
AACTTATTTTCCCACCTCCCAATAGTGTGGTTTCATCATCATGCTCAAATATTTCAACCAAGGACCGTGGTT
Seq C2 exon
AATTCTGCCCAAATTCCTCCATATGCCCTGGGGAAGTCATTGAGGCCCTCAGCTGAAATGATTGAGACTACAAATGATTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACTGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-9/9=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000357182fB8041
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCACCATGAACTGTTGTGA
R:
TTTCAGCTGAGGGCCTCAATG
Band lengths:
168-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development