HsaEX0072926 @ hg38
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr1:35012431-35015162:-
Coord C1 exon
chr1:35014988-35015162
Coord A exon
chr1:35014697-35014888
Coord C2 exon
chr1:35012431-35012581
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTATTTCCTAGACT
3' ss Score
9.26
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGACATTTTAAATCCTAAGGATGTGATCACAACTCGCTTTGAGAATTCCTATCCTAGCAAAGATTTCTGCAGCCAATCATGCTTGTCATCTTATGAGCTAAAGAAAAAACCTGTTGTTACCATATATACCAAAAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq A exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
Seq C2 exon
AATTCTGCCCAAATTCCTCCATATGCCCTGGGGAAGTCATTGAGGCCCTCAGCTGAAATGATTGAGACTACAAATGATTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACTGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867_MULTIEX1-8/9=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGCCAATCATGCTTGT
R:
AGTAACAGTCTTAACTCTGTAAGCA
Band lengths:
254-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development