BtaEX0041050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111246680-111252145:+
Coord C1 exon
chr3:111246680-111246854
Coord A exon
chr3:111246953-111247144
Coord C2 exon
chr3:111251995-111252145
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTTTCTTTCCTAGATT
3' ss Score
11.52
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGACATTTTAAATCCAAAGGATGTGATCACAACCCAATTTGAAAATTCCTCTCCTAGCAAAGATTTCTGCAGCCAATCATGCCTTTCTTCTTATGAGCTGAAGAGAAAACCTGTTGTTACCATATATACCAATAGCATTTCAACTAAGTGCAGTATGTGTCAGAAGAATGCTGAT
Seq A exon
ATTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGCGATGCCTGTTTTTCAAAATTTCATTCTACCAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTACTGCTACAGTAGCTCTGGTCCCTGCCAGTCCCAGAAGGTCTTTAGTTCCACAAGTATCATGGCGTATAAGCAG
Seq C2 exon
AATTCAGCCCAAACTCCTCCATATGCCTTGGGAAAATCATTGAGGCCCTCAGCTGAGATGATTGAGACTACGAATGACTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACAGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=52.5)
A:
NO
C2:
PF064679=zf-FCS=WD(100=62.7),PF064679=zf-FCS=PU(5.0=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCCAATCATGCCTTTCT
R:
AGTAACTGTCTTAACTCTGTAAGCA
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development