HsaINT0186068 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35478032-35480489:-
Coord C1 exon
chr1:35480298-35480489
Coord A exon
chr1:35478183-35480297
Coord C2 exon
chr1:35478032-35478182
Length
2115 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATGTTATTTTATTTTAATAGAAT
3' ss Score
7.37
Exon sequences
Seq C1 exon
ACTCGATTTGAAGTTAAATATCAAAATGTGGTACATGGTCTTTGTAGTGATGCCTGTTTTTCAAAATTTCACTCTACAAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGAGCTATTGCTATAGTAGCTCTGGTCCTTGCCAATCCCAGAAGGTTTTTAGTTCAACAAGTGTCACGGCATACAAGCAG
Seq A exon
GTATGAATATCTATTTGTTGCATGTACTTAGGCCCACTCCTTCTGATTTGGCTGCACAGGGATGAACTACAAAATGAGAGTGAGCTCCTCCCATTAGTCCATCCTGATATGTGATTTCCCTTCCAGAAAATGGGATAGATTCTGATGGTGTGAGGGATGATTGTGGTGGTAAGTTGATATAGGTAAAATAGGTCCCTTTTTTAAGGCTCCCTTCATAGCTAAGAATTTACAAATGTGATTTCTTTTCTTTTTTTGAAATCGAGATAGGGTTTTGCCATGTTGCTCAGGCCGGTGTTGAACTCCTGAGCTCAAGCCATCCACTCGCCTCAGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCAACCACACCTCGGCCTCATAAATGTAATTTCATGATTTTCTGTGAGCATGAAATATTTTGTGATGTATTGATAGCAAGAAAACCATATTATAAATAAACCATAAGCAAGAGTTAAGATGATAAAATCAGTGAATCTAAACAAAGCTTGTCTTTTTCATTTCAAAATGTGTTTGGGAATGAATTGTAATTATTTGGTCAACACTGTCTCATGAGAATACTTCAAGTAATTTTATTTATTGTAATGAATAATGGATTAAGCCGGTTACTAAATATTATCACCTTGTGTCAATTTAATTATTACTAATTTGTGGTTTTAAAAAGTTTTTCTTAAAGAAGTATCTTGTAAGGCCGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCAAGGCGGGTGGATCACGAGGTCAGGGGTTCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTGTACTGAAAATACAAAAATTAGCTGGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCAGTCCAGCCTGGGTGACAGAGCAAGACTGTCTCAAAAACAAACAAACAAACAAAAAAAAAAAACAAAGATGTATCTTGTAAATGATAATTAAACTTTTTTTCAGTTAGCAAGTTTGATTTGTTGCTTCCTTTGAGCAGTTGGTAATGGACATATGGACATTCATCACTGAAAAGAATCTCTTTTTTTAAGATTTGCCATTTTTGGCAGTCTGGTTCTACTTTCACAGGAAAAGAATCCATGTTATTTTATATATGATCCCAAAATCAGTTCCATTTCTAATTTTGTTACTAGTATTGTACTCTGTCTTTTTACTAGGAAGATTATGTAGTGAAACCTCACAATTTATATTTTCCTACAATTTCTTTTCATATTGAGAGACCTTATAATGTATCACTGACAGCATAGTGTAGTGGTTAGGAGCCTGAACTTTGGAGCCTGATGAAATGAGTTTAATTTCCTACTTCTTCTGCTCATCTGTTAATTTAAACTTTTTGTTAATGTAATTTTTGAGAGCGCCTCACTCTGTTGTTGAAAGGTTTCTGTGATACACTATATATAAATTTCTTAGCCTGGGGCCTGACTCATGGTAAGCATTCAGTAAGTTATAATATTGGTTATGTAAATGGTAGCTATTTTTATTATTTCTTAAAACATGAATAAACTTATAAGCAGATTTTATTATGAAACTCAGCTTGAAAAATAGGTAGTTGTGTAGGATCTCTATTAATATACATTAAATATCATTTCTATCTCCTGCTAAAGAATCTCACAAATTAAGTAACCTTAAAGGTGGTAGACTCTTCTAGATTGATGTACAAGACTATACCAAGAATGACCCTTTGGTTCATGGGTTAGCTGGTCTTCTCTGGTTATTGGTGATTAAAAAGTATGTAATGACTATTTAATTCATTACTTGTGTTTGAATTCATGTGTTTTGTTTGCTAAGATCTCTATCTGAATAGTTACTAATTTTCTTCAGTTTCTATTTTATTGTTGTCTGGAAGAACTTATTTTCCCACCTCCCAATAGTGTGGTTTCATCATCATGCTCAAATATTTCAACCAAGGACCGTGGTTGTAGGTAGCTTTTCTTTTTACTTTTTTGAACAATATGTAAATATGTATGTTTGTACTAGGTATCTAATGTTATTTTATTTTAATAG
Seq C2 exon
AATTCTGCCCAAATTCCTCCATATGCCCTGGGGAAGTCATTGAGGCCCTCAGCTGAAATGATTGAGACTACAAATGATTCAGGAAAAACAGAGCTTTTCTGCTCTATTAATTGCTTATCTGCTTACAGAGTTAAGACTGTTACTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=WD(100=62.7),PF064679=zf-FCS=PU(5.0=3.9)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)