GgaINT0137484 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4314844-4315939:-
Coord C1 exon
chr23:4315727-4315939
Coord A exon
chr23:4314995-4315726
Coord C2 exon
chr23:4314844-4314994
Length
732 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
CAATTTTACTGTTTCCACAGAAG
3' ss Score
6.81
Exon sequences
Seq C1 exon
ATCAGACATGAAGTGAATTACCAGAACGTCGTACACAAGCTCTGCAGTGATGCCTGCTTCTCCAAGTTCCGCTCTGCTAATAACTTAACCATGAACTGCTGTGAGAATTGTGGAGGTTACTGCTACAGTGGGTCTGGGCAGTGTCGCATGCTGCAGATAGAGGGACAGTCAAAAAAGTTCTGCAGTTCGACATGTGTGACACTGTACAAGCAG
Seq A exon
GTATATTTTGACACGGCGTTAAAAGAACATCTTTGGTACATCTTGGCTTATTAGCTGATGGTTTCTGTTGCTTTTGTGGTCTAAGATGCTTCCTTTGCCATTGCTGCTTAGTTTTTGCTAGAAATATTGCTCTGTTTCCCTTACCACTGGAAAGGCAAGCAGAGTATTCCAATGTGAGAGAAGACACAGTGGGACCATGCAGCAGCAGTGCACTGTGGTGCATTTGGGCCATCCTCTGAGGAGAGAACCATCATCTGACAAAGCACACAAACCTCATGAGCAAAGCCCTTTTGTCAGCCTTTGGGATTGCTCTGAGCATTCTCTGTGCTGTGACAGCAGTGGTGCAGTTTCTCACAAGCTGCTTGAGAATCCTTAGAAATCAAGAGCAGTTTAACTGCAGGGTATCTCACACTACAACACATCCTTCCTGACGCTGAAAAACAGATGATTTCTGAAATTAAGTCTTTCTAAACACGTTGTCTCAGGCATGCTCGACAGTCTTATGGTTGTGGGTACCTTAAATAACAGAAAAACATGAGAGAGCACTTCATTTTTGACCCATTTCAGCTGTGAAAATCATAGCATTTGAACTAAGTGGATAAAAGTGGTAATTAGTTGATCATTTTAATTGTCGTTTTTAATTTTTTAAGTATTGTAATTTTTATTTTAATGGTGTTGGGTTATGAAAAATGCTAAGCTTCAGGTGCATGACCAATTTTACTGTTTCCACAG
Seq C2 exon
AAGTCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACATGAAGTGAATTACCAGA
R:
CTGACAAGCAGTTAACAGAGCA
Band lengths:
334-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]