HsaINT0186050 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35847147-35851193:+
Coord C1 exon
chr1:35847147-35847359
Coord A exon
chr1:35847360-35851042
Coord C2 exon
chr1:35851043-35851193
Length
3683 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TTGTTTTATTCTCTTAATAGAAA
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAATGTGGTCCATAAACTTTGCAGTGATGCCTGCTTCTCTAAGTTTCGTTCTGCTAACAACCTCACCATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTACAGTGGGTCGGGACAATGCCACATGCTTCAGATAGAGGGACAGTCTAAGAAGTTTTGTAGTTCATCGTGTATCACGGCATACAAGCAG
Seq A exon
GTACATGACCATATTTAATCTTGATGTCTTTGTTCAGTTCAGGTAATCTGTATTTTTAGTCAGAATTATTTATGAAAATGTTGTTTTGCAATATTGGGTTTACTGGCCAAGTGCCATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGAGGTTGGGAATTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGCACATCCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCGTACCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAACAAAAATGTATATATACACACATACACACACACACACACACACACACACACACACGTATATATACGTATATATGTATGTATATGTATATATATGTAAATATGTATGTGTATATATATGTATATATACATATAGAGAGAGTTTACTATTTGTTTTAACTGGTATTCTTTATACATAAGTAGTATTTGTTGAATAAATGTGCATTAAATATTCATACAGAGTTCTATAAGTAGCAGTTTTATTCATGCATTTGTTTATACACGTTTATGCATTTGAAATACAAGTTTTTAGAGTGTGGCTTTTTTTTTTTTTGAGATGGAGCCTTGCACTGTCTCCCAGGCTGGAGTGTGATCCCGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGCGCCCACCACCAGGCCTGGCTAATTTTTTTGTATTTTTATTAGAGATGGGATTTCACTATACTGGCCAGGCTGGTATCAAACTCCTGACCTCAAGTGATCCACCTGCCTCGGCCTCCCAATCCCTGTGCTGGGATTACAGGTGCGAGCCACCACGCCCGGCCAGTATGGCTTTTTTATTTCAAAAGTGATTTGTATTCTTTAACAATATTTTGAAAGTTAAAAAAAAACATGAAGAAATGCAGTGTATCTCTCACAGATAACAAATCCTGTCATTTTGGTGTATAGCCTTCTAATCTTTCCAGCATGTGAGATTTGCATATATACTTCTTATTTGACAAGGAAAGGTTCAAGTTGCATATGTAGTGTTGAAATCTGATTCACAGAATTAAAATTGCAAACCAGATAATCAAAATTATATCATTAATTGTTACAGTAAGGGATTTTTCTTATCTTTATGAAATAGGAAGAAATAGATGTGGATTATATATTTGTGAATTGATGAGGTGTGCACGGGATGAACTGGATGAACTCTATAACAAATGTCTTTTATGTAGTTTTGTGTGTATTAGATTTGTATTTTATTAGTGAATTTTGATCAAATATTAGTTTTAAAATTGATAAACCTAAAGGAATAGTAAATGCTATATATATTTCTAATTTTTAATTTTTGTGGGTCCATAGTAGGTGTATATATTTATGGGGTAAGTACTTTTAATATTTTTAATTTTATAATGTCTTTTATGTAAGTGCATTTGCTAATCATTCTTTTCCTTAGAATAGTAAGTTTTTGTACAGTTTACCAAAATTGGTGAATTTAATAGCGTTGATTAGGAACATTCTTGTTAATTGTTCTTAAAACCTTGTAGTAATTTTGGAATTTAAGCGTGTTTCAATTTATTTCCTGTTAATGTGAAAACACACTATAATGGCTAAGTTTTACTATTCATTCCTTATTTTTGTTCTCAAAGAAAAAAAAAATCCCCACATCTTCATTGTTTTGTCATTTTCCAAAAGACTGTTCTTTTCCTGATACTGTATCAGGTACTAAAAGTTACCTGGATTCAGTCCATTGAAAGATGAGTGATAGTCCACAAGAGAGGGAGAAATAGGATGAAACATCTTAATTTTAAATTTATTCTTTACTTTTAATTTAGTCAAAACCTATTAAATTTTTCATGTATTATATCTGCTGTGGTAGAGAAAGAACTGGAATTTAGAAGTAAGGCAGATCTACATTTAATTCTAGACCTTATGTTCAAATACAGTTTTACCTTGGGGAAAGCAGTTAAGCTCCCTGAGTCCCAGTTTTTCTGTCTGTAAATAACTATGATACCACCTATGTCACTGGGATGTTTTTAGGATTATAGAAAGTAAGAATGAAAGAATGCCTAGTATGTAACTGAGGCATTGTAGATGGTCATTTCTGCTACCTTCCTTTCTTCCTTATATATAATTCATTCAACAAACATTAGATATAATTTCTGTTTTGAGGGGCTGCCTGTCTCCTGAGAAAGATAAGACGTATAAATGAGTAAATAGAGATGCTATGATGGAAGTATTATGGGTACAGTGGGCCACAGAGGTAGCATAGTGAGCTCTACTTGATAGGGAAAGATGAGACTATCAGCAGAAGCTTCACAGAGGTAACTCTTGATCTGGGTCTTACAAATGAGGTTTGCTTTTACAGTCCTCATTAGGGAGGAGAGGGAAATGGGGTTAGAGATTTAGAAGACATTCCAGAATTCAGGCATATATTCACTTTACTGTGTATTTATTTTAATATCAAGTTTTACAAATTGATTCTTTAAGAAGGAAGATTGCTCTTAAAATCTCCTAATTGGTGCTGGACGTACTTTAAAAATTATCCTGAATGTGTGACATGTTAATAATACTTAGCATTATTTGCTGCTGAATCCCTAATTGGGTGAAGACTTAAGATAACGGACTCTGGTTGTTTGTATTTGGACACCTGTGATGATATCCCAGGTTTGCTCTTACTTTACGCTTATGGAGTATTTTTTTTATTATTAGTGGTAGAATATTTGCCAATAAGTTGCCTAATAAGGTTACTAATTTCCTTAAATTCATATTTACAAGCACCTTTGGAGGGGGTTATTTCAATTTATAGGATGATATAGTATAAAAGCATGAACTTGCTGTTATTTAATGTTTTTAAAACTGTGGTTATGACCTATTAATAGACCCTGAAATTAATTACTAGGTTATAACCAGCATTATTATTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTGAGGTGGAATCTTCTCATTCTGTCGCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCGCTGCAAGCTCTGCCTCCTGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTACAGGCGCCTGCCACTATGCCTGGCTAATTTTTTTTGTATTTTTGTAGAGGCAGGGTTTCACCATGTTGACCTTGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCGATGTGCTGGGATTATAGGGGTGAGCCACTACGCCTGGCCGCATTACTTTTTCAATGAAATAGAATAGATTGGAAAATATCAAAGTGCATTACATGTTATCATGATATTTATTCCTCTATAAAACTTTTTAGTTTTATTACATACATGCATCATACACAAATGCAAAATCTCAGAAGTACATGTGTACCATGAAACTTCCTATTGAGGATTACAATCATAAAAGTTTGAAAATCACTGATTTCAAATATTTCAAAAGTGTTGAGTATAAACATTTCGAAGAATTATGCTTTTACTAGGAATTTGTTAAAAATGAATGTTGTTTTATTCTCTTAATAG
Seq C2 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGGAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0),PF064679=zf-FCS=PU(0.1=0.0)
A:
NA
C2:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(5.0=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)